How to Organize Bible Study Notes So You Can Find Them Again
November 7, 2026
Most people who study the Bible for a few years end up with notes in many places: the margins of a study Bible, a stack of journals, sermon outlines from the bulletin, a notes app, and highlights in two or three Bible apps. Each one made sense at the time. Together they are hard to use, because the note you want is never in the place you are looking.
This guide sets out a simple system that works on paper, in an app, or with both. It rests on one idea: organize notes around the passage they are about, because that is where you will be when you need them.
Why notes get lost
- They are filed by date. A journal is in the order you wrote it. When you come back to Romans 8, you need to remember which month you studied it.
- They are in too many places. Sermon notes in one notebook, small group notes in another, quick thoughts in a phone app.
- References are written differently. “Rom 8:28”, “Romans 8.28” and “Ro. 8:28” are the same verse to you and three different things to a search box.
- Nothing sends you back. A note you never reread might as well not exist.
File by passage
The single most useful habit is to make every note findable from the passage it is about. Dates still matter, but they are secondary.
- On paper, keep an index at the back of each journal: one line per passage, with the page number. Some people keep a separate index notebook, arranged by book of the Bible, covering all their journals.
- In a study Bible, write short notes in the margin beside the verse, and longer ones elsewhere with a small cross-reference in the margin (“see journal 3, p. 41”).
- In an app, attach the note to the verse or range of verses rather than keeping it in a separate list of documents.
When a note covers a whole sermon or a long study, file it under the main passage and note the other references inside it.
Use one reference format
Pick a way of writing references and use it everywhere. A good default is the full book name, chapter, colon and verse, with an en dash or hyphen for ranges: “Romans 8:28–39”. If you prefer abbreviations, choose one per book and keep to it. This matters most for anything you will search later, and it makes a paper index much easier to scan.
Three kinds of note
Notes are easier to use when you know what kind each one is. Most fall into three groups:
- Observations: what the text says. Repeated words, who is speaking, what happens, what the passage connects to. These are the foundation of study and stay useful for years.
- Questions: what you do not understand or are not sure about. Mark them clearly, with a question mark in the margin or a “Q:” at the start, so you can find your open questions later.
- Applications and prayers: what the passage asks of you, and what you prayed about it. These are dated by nature. Rereading them later shows you where you were.
You do not need a separate notebook for each. A small mark at the start of a line is enough to tell them apart.
Highlight colours, on purpose
Highlighting helps when each colour means something. Without a system, a page ends up yellow all over and the colours tell you nothing. Keep it small: four to six colours, each with one meaning you can remember without a key. One common set:
- Yellow: promises of God.
- Blue: commands and instructions.
- Green: verses about growth and the Christian life.
- Red: sin, warning and repentance.
- Purple: who God is: his character and names.
The specific meanings matter less than using them consistently. Write your key inside the front cover of your Bible, or in the app’s settings if it lets you name colours. A highlight with a meaning can be found again by that meaning: every promise you have marked, in one list.
Bring everything into one place
You do not have to move every old note at once. Start with what you study next:
- Sermon notes: file them under the sermon’s main passage. Our guide to taking sermon notes has a simple method for writing and reviewing them.
- Old journals: when you study a passage, look it up in your journals’ indexes and copy or photograph what you find into your current notes.
- Other apps: most Bible apps can export notes and highlights. Export them now, even if you keep using the app, so you have a copy you control.
Over a year or two, the passages you study most will have everything gathered beside them.
Review, or the notes will not help
A note helps when you read it again. Two habits make that happen without extra effort:
- Read your old notes when you read the passage. Before studying a chapter, look at what you wrote about it before. This is the payoff of filing by passage.
- Look at your open questions once a month. Some will have answers by then. Others will be good starting points for your next study.
Paper or app?
Paper is quiet, lasting and good for thinking. An app is searchable, goes everywhere and can put notes beside the verse automatically. Many people use both: paper during a sermon or a quiet morning, and an app to keep it all findable. If you do, a photo of each paper page, filed under its passage, joins the two.
Whatever you use, make sure your notes can be exported in a plain format. Notes you can take with you outlast any app.
Organizing notes in Carrell
Carrell is a Bible app built around keeping study material beside the text. Here is what it does for notes today:
- Notes attach to a verse or a range and show in the margin beside it. Sermons and photos of your notes that mention a passage show up there too when you read it.
- Highlights come in six colours on the Mac and Linux and five on iPhone and iPad, and you can give a colour a name, such as “Promises”. The highlights page lists everything you marked by colour, book or testament.
- Photos of paper notes and slides are read, and the pages are linked to the verses they mention.
- Search covers your notes, sermons and photos by the words in them. Ask answers questions from the Bible and your own notes, citing every source.
- Import and export: the Mac and Linux apps import notes from YouVersion, Olive Tree, Logos, Blue Letter Bible, e-Sword and Accordance, and export to Markdown or JSON.
Carrell is free for reading, the bundled Bibles, search, highlights, notes and bookmarks, on iPhone, iPad, Mac and Linux, and it is in beta. Download Carrell or see everything it does.